I chatted to the crew at Alex's.. so some fake news from me (misunderstanding), they said they tried to code it out but couldn't get that right.
What they did to solve the CEL was this (super simple)
They left the sensor from the old CBFA water pump connected to the connector and hid it in the engine bay.
This way the heating circuit was completed and kept the vehicle happy with the new CCTA style aluminum water pump in place.
Here was the response I got from Ian (great guy) at Alex's when I confirmed what they did:
Sheldon,
Yes Correct. Sorry I shouldve explained that better. We tried to code it out and that's probably what you remember us talking about.
I even reached out to APR to see if they would allow me to force a later model (14' CBFA) Tune so it would code it out, but they wouldn't.
So we pulled it back apart, plugged the sensor in and secured it nicely and hid it.
View attachment 168542
All that sensor does essentially is help the thermostat open which is overly redundant and why they got rid of it after that first 2010 Production run(Early 2011 model) of the CBFA.
So It just needs to have that heating circuit in there to not throw the code, and you get a 10X more reliable water pump.
-Ian